RepearExplorer: discover repeats in your next generation sequencing data

RepeatExplorer includes utilities for Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data and tools for the detection of transposable element protein coding domains.

Dear Galaxy users,
The current Galaxy interface is out of date, and the software configuration is behind the point of reparation. That's why we decided to create a new version from scratch using the latest Galaxy interface accompanied by a new scheduling server with better computational resources accessible at URL https://repeatexplorer-elixir.cerit-sc.cz/galaxy/ via your valid accounts. The old platform will be accessible at https://galaxyelixir.vm.cesnet.cz/galaxy/ for 6 more months, so you have access to your data. After June 9 (including), the job scheduling is turned off, so consider the old platform to be a read-only system til the end of its existence (30.11.2024).
RepeatExplorer team

The user of Galaxy based RepeatExplorer is obliged to use the following acknowledgement formula in all your publications created with the support of RepeatExplorer: Computational resources were provided by the ELIXIR-CZ project (LM2015047), part of the international ELIXIR infrastructure.

If you need help with RepeatExplorer or you want to report a problem and our wiki is not able to give you answers, please contact server administrator.

Elixir Czech Repuplic logo RepeatExplorer tools are developed and maintained by the Laboratory of Molecular Cytogenetics, Institute of Plant Molecular Biology, Biology Centre AS CR, Ceske Budejovice, Czech Republic.
Galaxy portal is provided within Elixir CZ project. Galaxy server is maintained by CESNET and CERIT-SC that are participants of this project.